d_img_proc_3d.h

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/************************************
 *   added:     05.07.2019          *
 *   author:    David Eilenstein    *
 *   contact:   D.Eilenstein@gsi.de *
 *   project:   ImageD              *
 *   facility:  GSI Darmstadt, Ger  *
 ************************************/
 
 
#ifndef D_IMG_PROC_3D_H
#define D_IMG_PROC_3D_H
 
//own
#include <d_enum.h>
#include <d_stat.h>
#include <d_math.h>
#include <d_img_proc.h>
#include <d_physics.h>
 
//general
#include <iostream>
#include <vector>
#include <fstream>
#include <sstream>
#include <iterator>
#include <thread>
 
//Qt
#include <QMainWindow>
#include <QImage>
#include <QPainter>
#include <QPen>
#include <QColor>
#include <QFileInfo>
#include <QDir>
#include <QString>
#include <QDebug>
 
//openCV
#include <opencv2/core/core.hpp>
#include <opencv2/highgui/highgui.hpp>
#include <opencv2/imgproc/imgproc.hpp>
 
//namespaces
using namespace std;
//using namespace cv; (prohibited because of abigous names with qtdatavisualization)
#include <d_opencv_typedefs.h>
 
class D_Img_Proc_3D
{
public:
    D_Img_Proc_3D();
 
    static int      Duplicate                       (Mat *pMA_Out, Mat *pMA_In);
 
    static int      Convert_Uchar_1C                (Mat *pMA_Out, Mat *pMA_In);
    static int      Convert_Double_1C               (Mat *pMA_Out, Mat *pMA_In);
    static int      Convert_Double                  (Mat *pMA_Out, Mat *pMA_In);
 
    static int      Pad_Border                      (Mat *pMA_Out, Mat *pMA_In, int border_size_x, int border_size_y, int border_size_z, int border_type = BORDER_CONSTANT, double border_val = 0);
 
    static int      Filter_Function                 (Mat *pMA_Out, Mat *pMA_In, Mat *pMA_Mask, function<double (double cur, double nei)> F1_CenterImage, function<double (double f1r, double msk)> F2_f1mask, function<double (vector<double> vf2r)> F3_Combine, function<double (double f3r, double cen)> F4_f3center, int border_type = BORDER_CONSTANT, bool DoNonZeroMaskOnly = false);
    static int      Filter_Function_1C              (Mat *pMA_Out, Mat *pMA_In, Mat *pMA_Mask, function<double (double cur, double nei)> F1_CenterImage, function<double (double f1r, double msk)> F2_f1mask, function<double (vector<double> vf2r)> F3_Combine, function<double (double f3r, double cen)> F4_f3center, int border_type = BORDER_CONSTANT, int thread_number = 8, bool DoNonZeroMaskOnly = false);
    static int      Filter_Function_1C_Thread       (Mat *pMA_Out, Mat *pMA_In, Mat *pMA_Mask, function<double (double cur, double nei)> F1_CenterImage, function<double (double f1r, double msk)> F2_f1mask, function<double (vector<double> vf2r)> F3_Combine, function<double (double f3r, double cen)> F4_f3center, int z_start, int z_end, int y_start, int y_end, int x_start, int x_end, bool DoNonZeroMaskOnly = false);
    static int      Filter_Function_8bit            (Mat *pMA_Out, Mat *pMA_In, Mat *pMA_Mask, function<uchar (double cur, double nei)> F1_CenterImage, function<uchar (double f1r, double msk)> F2_f1mask, function<uchar (vector<double> vf2r)> F3_Combine, function<uchar (double f3r, double cen)> F4_f3center, int border_type = BORDER_CONSTANT, bool DoNonZeroMaskOnly = false);
    static int      Filter_Function_8bit_1C         (Mat *pMA_Out, Mat *pMA_In, Mat *pMA_Mask, function<uchar (double cur, double nei)> F1_CenterImage, function<uchar (double f1r, double msk)> F2_f1mask, function<uchar (vector<double> vf2r)> F3_Combine, function<uchar (double f3r, double cen)> F4_f3center, int border_type = BORDER_CONSTANT, int thread_number = 8, bool DoNonZeroMaskOnly = false);
    static int      Filter_Function_8bit_1C_Thread  (Mat *pMA_Out, Mat *pMA_In, Mat *pMA_Mask, function<uchar (double cur, double nei)> F1_CenterImage, function<uchar (double f1r, double msk)> F2_f1mask, function<uchar (vector<double> vf2r)> F3_Combine, function<uchar (double f3r, double cen)> F4_f3center, int z_start, int z_end, int y_start, int y_end, int x_start, int x_end, bool DoNonZeroMaskOnly = false);
 
    static int      Filter_Median                   (Mat *pMA_Out, Mat *pMA_In, int size_x = 3, int size_y = 3, int size_z = 3);
    static int      Filter_Eilenstein_Greater_Sum   (Mat *pMA_Out, Mat *pMA_In, int size_x = 3, int size_y = 3, int size_z = 3);
 
    static int      Morphology_Dilation             (Mat *pMA_Out, Mat *pMA_In, int size_x = 3, int size_y = 3, int size_z = 3);
    static int      Morphology_Erosion              (Mat *pMA_Out, Mat *pMA_In, int size_x = 3, int size_y = 3, int size_z = 3);
 
    static int      Neighborhood_Configs            (Mat *pMA_Out, Mat *pMA_In);
 
    static int      Distance_Transformation_EDT     (Mat *pMA_Out, Mat *pMA_In, double spacing_x = 1, double spacing_y = 1, double spacing_z = 1);
 
    static int      EulerNumber                     (double *euler_number, Mat *pMA_In);
    static int      EulerNumber                     (double *euler_number, Mat *pMA_Out, Mat *pMA_In);
 
    static int      Calc_Hist_8bit_1C               (vector<double> *v_hist, Mat *pMA_In, bool uniform, bool accum);
 
    static int      InterferometerMichelson         (Mat *pMA_Out, int scene_size_x_px, int scene_size_y_px, int scene_size_z_px, double scale_px2um, double wavelength_um, double dist_source_um, double dist_detector_um, double dist_mirror1_um, double dist_mirror2_um, double angle_mirror1_x, double angle_mirror1_y, double angle_mirror2_x, double angle_mirror2_y, bool intensity_notfield, bool beam_atSO_SO, bool beam_atSO_M1_SO, bool beam_atSO_SP_M2_SP_SO, bool beam_atM1_SO, bool beam_atM1_M1_SO, bool beam_atM2_SP_SO, bool beam_atM2_M2_SP_SO, bool beam_atDE_SP_M1_SO, bool beam_atDE_M2_SP_SO);
 
};
 
#endif // D_IMG_PROC_3D_H